The sixth row indicates whether the gene was found to beĭisruptable (i.e. The numbers indicate the genomic coordinate of Transcription factor binding sites as determined in Zhou etĪl. The gene of interest as well as any known cell cycle-regulated Lists the experimentally identified transcriptional start sites for Localization carton based on PSORTdb predictions and the genome wide The localization study is not available, we provide a predicted That determine protein localization by observing fluorescent proteinįusions at multiple points in the cell cycle. We manually curated these cartoons based on published papers We also provide a cartoon of the protein localization across the cellĬycle. N- and C-terminal fluorescent protein fusions. Localization images from a genome-scale imaging experiment involving

Links are provided to a comprehensive database of protein.

Inner-membrane-associated, or outer-membrane-associated based on

The protein is classified as either cytosolic,.

Summarizes the community knowledge on the subcellular localization of Clicking on the genome coordinate links to our dedicated Ribosome profiling, LC-MS proteomics, and RNA-seqĮxperiments. Reannotation (NCBI accession number CP001340.1) based on results from The ORFĬoordinates present in the database reflect a recent major Product was identified by LC-MS mass spectrometry, the product contains the LC-MS Verified tag, indicating that the gene product is present during normal laboratory growth conditions.ĭenotes the protein coding nucleotides of the gene.

Provides a description of the gene product NCBI predicted function and a link to the UniProt entry. The genome of the NA1000 laboratory strain), and the CC locus ID, as Provides the standard name of the gene, the CCNA locus ID (based on The overview section provides a table listing curated information Time resolved gene expression in wild type cells The results page willĭisplay information for the first 20 genes located between start and end. Located in genomic range between cooridnates start to end. Search by genomic coordinate: You can search for all genes.You can goīack to the search page by clicking the back option in your browser. If a name not found you will be directed to an error page. Pressing 'Gather Data' will move you to the results page. Search by name: You can search a gene by its standard name.Ifĭata is included in name this is used and not the genomic coordinates. You can search for genes by either name or by genomic coordiantes. We encourage users to send us general questions and suggestions, updatesĪfter loading CauloBrowser you should see something like this: Unique and valuable systems biology resource. The depth and diversity ofĭatasets collected by the Caulobacter community makes CauloBrowser a In addition, the site providesĪ genome data browser that enables customizable visualization of all Graphs of time resolved expression profiles, and schematics of protein Search results about individual genes are displayed as tables, Quickly searching genes of interest and downloading genome-wide This site provides a user-friendly interface for Generated CauloBrowser (an online resource forĬaulobacter studies. A majorĬhallenge involves the integration of these diverse datasets into oneĬomprehensive community resource. Studies, and global chromosome methylation (SMART sequencing). RNA-seq, ChIP-seq, ribosome profiling, LC-ms proteomics), geneĮssentiality studies (Tn-seq), genome wide protein localization Including data from gene expression profiling experiments (microarrays, Generated a wealth of high-throughput spatiotemporal databases

Caulobacter crescentusis a premier model organism for studying the

Gene expression c artoon